I searched the world over (at least Uruguay) for this lichen, Karoowia saxeti, having never seen it. Well, I actually found it and the following is what I was after:
#NEXUS
BEGIN DATA;
DIMENSIONS NTAX=4 NCHAR=615;
FORMAT DATATYPE=DNA MISSING=? GAP=- ;
Karoowia_saxeti_540 CTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACT--GAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCCTAACTCTTCACCCTTT-GTGTACCTACCTTTGTTGCTTTGGCGGGCCCGAGAACCCTCTCGCGCTGGCTCCTAGGTCGGCGAGCGTC
CGTCAGAGGCCCATTCAATCCTATTGATTAGTGACGTCCGAGTTCAAACAATAAGTAAAAA--CTTTCAACAACGGATCTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATT
GCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGAGGGGCATGCCTG
TTCGAGCGTCATTGCACCCCTCAAGCGTAGCTTGGTATTGGGCTCTCGCCCCTGCGGCGTGCCCGAAAAA
CAGTGGCGGTCCGGCGCGACTTTGAGCGTAGTAATATCCTCCCGCTCCAAAGCTTTCGTCGTGGCCGGCC
AGAGAACCCCACCGACTTCAATAATTGACCTCGGATCAGGCAGGGATACCCGCTGAACTTAAGCATATCAA
TAAG
Karoowia_saxeti_538 CTTGGTCASTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACT--GAGAGAGGGGCTTCGTGCTCCCGGGGGTTTCGGCCCCTAACTCTTCACCCTTT-GTGTACCTACCTTTGTTGCTTTGGCGGGCCCGAGAACCCTCTCGCGCTGGCTCCTAGGTCGGCGAGCGT
CCGTCAGAGGCCCATTCAATCCTATTGATTAGTGACGTCCGAGTTCAAACAATAAGTAAAAA--CTTTCAACAACGGATCTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT
TGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGCATTCCGAGGGGCATGCCT
GTTCGAGCGTCATTGCACCCCTCAAGCGTAGCTTGGTATTGGGCTCTCGCCCCTGCGGCGTGCCCGAAA
AACAGTGGCGGTCCGGCGCGACTTTGAGCGTAGTAATATCCTCCCGCTCCAAAGCTTTCGTCGTGGCCG
GCCAGAGAACCCCACCGACTTCAATAATTGACCTCGGATCAGGCAGGGATACCCGCTGAACTTAAGCATA
TCAATAAG
9 comments:
Brent wants to know what these sequences code for?
Woooow.
nothing better than bringing back a bunch of adenosine, guanine, cytosine and thymine as souveniers. Sweet.
Brent- this is the internal transcribed spacer(ITS) 1, 5.8s, and ITS2 of ribosomal DNA. They don't actually code for for any part of the ribosome, are cut out. They might have some structural importance in ribosome processing.
hmmmm... I'm having one of those moments when I wonder if I ever took a science class. Maybe once a LONG time ago. And I think I'm trying to block out the bad memory.
Glad to know someone knows what all that means!
that is so cool. can you do my dna next? I want it framed.
does this have anything to do with the previous post on Real vs Make Believe?
I just wanted to say hi and see how you are doing and how Hailey is feeling we hope everything is going well.
Hey, while we're talking genomes, have you seen the Music Genome Project at Pandora. It's much better than it used to be.
Post a Comment